Convert population genetics program

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This list is by no means complete or even exhaustive. At the bottom of the page, there are some other lists you may want to consult. Mol Ecol Notes. Author manuscript; available in PMC Sep Nicholas C.

Author information Copyright and License information Disclaimer. Fax: ; E-mail: ude. Copyright notice. See other articles in PMC that cite the published article. Abstract There has been a great increase in both the number of population genetic analysis programs and the size of data sets being studied with them. Keywords: allele, conversion, data file, format, genotype, population genetic. Acknowledgments Thanks to C.

A model-based method for identifying species hybrids using multilocus genetic data. Felsenstein Software List — list of phylogeny programs. Galaxy — workflow system for bioinformatics. GenAlEx — genetic analysis in Microsoft Excel. Genome Analysis Toolkit — tools for variant discovery and genotyping. Geneious — analysis of DNA sequence data. Geneland — statistical analysis of population structure.

Gephi — network visualization software. GOLD — graphical analysis of linkage disequilibrium. Gompert Lab Software — population genetics software s e. G-PhoCS — coalescent genealogy sampler suitable for genomic data. HaploBlock — haplotype block analysis and LD mapping. Haplogrep — mtDNA haplogroup classification. Haploview — haplotype block analysis and LD mapping.

Hey Lab Software — population genetics softwares for coalescent analysis e. Hudson Lab Software — population genetics software s e. Hybpiper — extracts target sequences from high-throughput DNA sequence capture reads. HybridCheck — for graphical analysis of recombination, introgression, and hybridization, including ABBA-BABA test s and the dating of recombination and introgression events. HyPhy — infers strength of selection from phylogenetic sequence data.

ImageJ — image acquisition, analysis and processing software. IMgc — generates recombination-filtered DNA sequence data. INCA — analysis of codon usage bias.